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ensembl mart
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biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart
error
ensembl
bioconductor
ensembl mart
7.0 years ago
daniel.carbajo
• 0
2
votes
12
replies
2.9k
views
biomaRt does not return entrezgene id
bioconductor
biomart
entrez gene identifiers
ensembl
ensembl mart
updated 7.1 years ago by
Thomas Maurel
▴ 800 • written 7.1 years ago by
daniel.carbajo
• 0
5
votes
5
replies
2.1k
views
News:
Ensembl 88 is out!
ensembl
ensembl mart
biomart
e!88
News
7.1 years ago
Thomas Maurel
▴ 800
1
vote
4
replies
1.7k
views
biomaRt scan error for latest assembly when indicating version Number
biomart
rstudio
ensembl mart
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
mullpaul
• 0
1
vote
1
reply
1.2k
views
News:
Ensembl release 86 is out!
ensembl
biomart
ensembl release
ensembl mart
News
7.6 years ago
Thomas Maurel
▴ 800
0
votes
0
replies
1.1k
views
News:
Ensembl 87 is out!
ensembl
ensemble mart
ensembl mart
biomart
News
7.4 years ago
amonida
▴ 20
0
votes
1
reply
867
views
News:
Ensembl 93 is out!
ensembl mart
ensembl93
biomart
news
News
5.8 years ago
amonida
▴ 20
7 results • Page
1 of 1
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Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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